The Experimentally Determined Velocity of Catalysis could be Higher in the Absence of Sequestration
Ikechukwu I. Udema *
Department of Chemistry and Biochemistry, Research Division, Ude International Concepts Ltd., 862217, B. B. Agbor, Delta State, Nigeria.
Abraham Olalere Onigbinde
Department of Biochemistry, Faculty of Life Sciences, Ambrose Alli University, Ekpoma, Nigeria.
*Author to whom correspondence should be addressed.
Abstract
Background: It is not unusual to observe calculated “total” free enzyme ([E]) in enzyme catalysed reaction, but this should include total enzyme-substrate complex ([EST]) which accounts for sequestration.
Objectives: 1) To show indirectly that the velocities of catalytic action can be higher than experimentally observed velocities without sequestration and 2) redefine the relationship between velocity of hydrolysis with Michaelian enzyme and [E], where concentration of substrate, [ST] < Michaelis-Menten constant, KM.
Methods: A theoretical research and experimentation using Bernfeld method to determine velocities of amylolysis with which to mathematically calculate [EST] and the enzyme-substrate complex ([ES]) prepared for product, P, formation.
Results: The [EST] is < [E]; [EST] and pseudo-first order constant, k decreased with increasing [ST] and increased with increasing concentration of enzyme [ET] while velocity amylolysis, v and maximum velocity of amylolysis, vmax expectedly increased with increasing [ET] and [ST].
Conclusion: The fact is that the [EST] is lower than what is usually referred to as free enzyme ([ET] - [ES]). Therefore, if the additional part of [EST] dissociated into product within the duration of assay, the velocity of amylolysis could be higher. The most important outcome and corollary when [KM] > [ST] is that v a 1/[E], v a [E][ST] and a quadratic relationship exists between pseudo-first order rate constant and maximum velocity of amylolysis; separately, v is not a [E] and if v a [ST] (if v/
[ST] is constant with coefficient of determination = 1), then KM is not applicable.
Keywords: Total enzyme-substrate complex, enzyme-substrate complex prepared for product formation, direct proportionality, rate constants, free enzyme, Aspergillus oryzea alpha-amylase.